Scaffold LPjun09P410mDRAFT_1003429

Overview

Basic Information

• Taxon OID: 3300000223
• Scaffold ID: LPjun09P410mDRAFT_1003429
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P4 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1553
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P4, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F047991	Metagenome	149	N
F077379	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P410mDRAFT_10034292	F047991	GAGG	MQTQNLVATNNSFSCVHTQDVLKQFKKRHKFAKQQTLSKHVTCTSIYTDDADICFTFNVVHNNTTYVVDVYANYNNNFVSGNLYNCTCNTLATQILQQHFNLKANYTQLYDDGMYYNAK*
LPjun09P410mDRAFT_10034293	F077379	GGA	MLTQKALTRNLTATLCTTSNTIFIHKHKKAHLTYTLNSAKVLRNVNAQQLQAFNNLQSTFMQNAKNFVVNNALVKQLLNN*
LPjun09P410mDRAFT_10034294	F003769	GGAGG	MQQLKTITVKTSTKQESVHMETLYAIIENCYNSLQIMEADCTSASYFINSANIFAQLQMLYCDNETNDYVSIESVMEVFSKNITFYDESCLYTNVVENTAMQNINIENYICMHN*