Scaffold LPfeb10P161000mDRAFT_c1034413

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPfeb10P161000mDRAFT_c1034413

Scaffold LPfeb10P161000mDRAFT_c1034413

Overview

Basic Information
Taxon OID	3300000219 Open in IMG/M
Scaffold ID	LPfeb10P161000mDRAFT_c1034413 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	872
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P16, Pacific Ocean
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-134.666667	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010791	Metagenome / Metatranscriptome	299	N

Sequences

Protein ID	Family	RBS	Sequence
LPfeb10P161000mDRAFT_10344133	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANKLMRRMIAIRNENFLWENIDVKTGHLRAVDELEKLVGTVFDVFDTMSIYVNGKSARRIWSRGF*

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