Scaffold LPfeb10P161000mDRAFT_c1013005

Overview

Basic Information

• Taxon OID: 3300000219
• Scaffold ID: LPfeb10P161000mDRAFT_c1013005
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1711
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026709	Metagenome	197	N
F084345	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
LPfeb10P161000mDRAFT_10130053	F026709	N/A	LDNMYIILIKDNHRYKLYTNEIFTTEKETLDYVERSKFKKNVEWKVEEFDNKYFRGGK*
LPfeb10P161000mDRAFT_10130055	F084345	AGGAGG	MKVRFIDHVNHVRYKDIEVKDMKQAEEMFEDGNIYDDYDKWEYGKEYGESYIEEIKKEDR