Scaffold TB18AUG2009E_c001274

Overview

Basic Information

• Taxon OID: 3300000203
• Scaffold ID: TB18AUG2009E_c001274
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4388
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029343	Metagenome	188	Y
F091426	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_0012743	F029343	GAG	MNEITEITENTTGPRTITSYEFARWAALLEAVDIIAEKCEDRGIDFNSNEGMKFIKPLDIQDYVDNRTDTLLMKIKTARDIEKNLINIKSLQIANKLRKLDIEE*
TB18AUG2009E_0012745	F091426	GAGG	VHKRKTNKILSEAGYETGNTYTGQLPATSTPETQDNYQTNDSPPTLEKLANLKNNGQGGVNPEALPYPLQDAVLQLANLYLTTLDLKNKAATAANMPLFKGKEKELKKFRAKLAGVMVAYKELASELNKFTLAPK*