Scaffold TB18AUG2009E_c000305

Overview

Basic Information

• Taxon OID: 3300000203
• Scaffold ID: TB18AUG2009E_c000305
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9939
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014940	Metagenome / Metatranscriptome	258	Y
F022104	Metagenome	216	N
F076853	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_00030516	F014940	AGGGGG	MASGDGLSTVYHLNRLAGTITNSVPQLDFNGAAVQWYFNVAGKKASRGIDALNQIYAYRNSGKNLFLDTPGILNALAGTVGLGEAEAAARITS*
TB18AUG2009E_00030517	F076853	AGAAGG	MCKECGCNKTAKGGTPETLTGKPTKSPYGEYEGVGGTK*
TB18AUG2009E_0003055	F022104	AGGAG	VTSTDLTTIAYNAVFTIGATGTGIWYVFKHGVQNVLRQEFNDIQTIKHEVTPNSGGSLNDAIRKQVIPMVETLVEKQQDIALEVATINGKFEQHIREHNA*