Scaffold TB18AUG2009E_c000040

Overview

Basic Information

• Taxon OID: 3300000203
• Scaffold ID: TB18AUG2009E_c000040
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42000
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (84.06%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F005449	Metagenome / Metatranscriptome	400	Y
F013058	Metagenome / Metatranscriptome	274	Y
F020513	Metagenome	223	Y
F049367	Metagenome	146	N
F070626	Metagenome	123	N
F086493	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_0000401	F020513	AGG	MLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPIVTPGIDYATAVITKCLMPDGKVNFEFERFDESDQDGAEQATDMVKYFLNNKNNSYMTIRDWAQDALLHKNGIVMVMPVRENIIQYKEVTGTRDQLKVFEIEAAQKGLKPLRQEMRKVDVNLQQAMMEAMQPGDEQEAEQEVDPGAELNEAIRNNTVYRAKYKLSGTKTNIRIKHVAQHYFVCNPTIPQIMYQDFVGFYEPMTIHEAKVQYPFIDMEEFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDGDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPKMGVNPEFIDAEEIQRGVSALFILDRKFDPAK
TB18AUG2009E_00004010	F070626	AGGAGG	MEIEWSLAHPLHDVEDIVNMADNIFGDEVEDLLTTERYIFRKNVTVASTVQIFDRSKEFLAVARVGNISGTGEFSDKLLGFCWFDRYGYTTYSNEEISNAKFHHVDLALPAKTRVKLINAMIDQHILWAYQNGIPVVCSTSIRSDYSGFMRIHEKRGFKVSGSYAWIRTKEGLNGIKGIEIANN*
TB18AUG2009E_00004031	F086493	GGA	MSIKDEVDAYREGFADGKQFMLEMIKESTKQEFEDIADLIIWIRKQEFQNEVK*
TB18AUG2009E_0000404	F001059	GGA	MDVYDIDALKADLPTAKELSQFVYDKTGIALDLIGKPKEEQYLAAKNALEGKKVPQDFITTDNPYVDKKDIIPIDEKKPFPPPRSDSLPPEESEIHHFNATNMPHPTHPQSDKKVQIMFRKYDNGVITYQIMGPTEMVAVGERINKYGQTVPEKYSWDDPRTEEIMLRRQDGSMTEKGRGLYMYCTGEKGANIWPLIDKNIESVSAKNIADPWA*
TB18AUG2009E_00004053	F013058	AGG	MNQLTTLLKDKHVLWALFIAVLSVMQGFLFVFPLTPVHQMIVGIIISVVVVLLRYIELNQPTGN*
TB18AUG2009E_00004062	F049367	AGGA	MALKLNLGTTQFGAPAPEAYARVTNFFGNKDNIQVQVSVHFSKDARDSNLSPVREDAHYIGLADLAGKGELMTAIYEVLKTMSQYQGATDV*
TB18AUG2009E_00004065	F000857	GGAG	MELNLDNEEAKINEDYYMKGNLEAGIEGVLARNNQMFNDVKSGTWSQTFKTDRIDYKIGAEDGRRYVQYTQHNVEAIRQNCKERREFYKIHGTANPFFAGTFHAMDLPKCFAHEISSRWFNNRPWELIKQDFDDKILFYAIVNEYYSDFVCHPSGKIPLPYNPIIPTR*
TB18AUG2009E_00004069	F005449	N/A	VCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPKMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVYEFAPLQGNLAYVESAMQSLKEDNMAMIGMTNPNDSLNPEVMKDGNSGFKLQTAMGPNQLIQDELIKNCAIAVQDLIHLVWHTMIQYADDYSIQQLAHICSEKGGPFLDAQKMANYEFIDRKMINIDLGLGFMSDENRLTRQQLITQAQQQFAQAMMMLTPDMPEMFDKARRPYEDTLRVLGVRHVDAYLPTLEEAMKILQAKSKAPPSAEDQLHQSKAQLNQATTQEVQAKTGKIVKETQQMDVDNMFDAMAAKKGNLKDVRID*