Scaffold TB18AUG2009E_c000015

Overview

Basic Information

• Taxon OID: 3300000203
• Scaffold ID: TB18AUG2009E_c000015
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66700
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002405	Metagenome	562	Y
F012448	Metagenome / Metatranscriptome	280	Y
F019309	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_00001523	F019309	N/A	MSYETSKLTELVAQKVDEKVRQLEEALGSRSAKDYAEYCAMCGEITGLLTVRRYITDLTKQIEESDD*
TB18AUG2009E_00001563	F002405	GAG	MIIEPEWVFPFEGMDVGDSFFIPTLRFAELIYALDCGAKRAKIRVKSYVSIKDDCIGVRTWRIR*
TB18AUG2009E_00001568	F012448	AGGA	MDIEKLRKTHHTTPVELDYVEFIEADDIWIKAYSVALTNTIITQHVHVHDHITLVSGGSIEAWQDGECLGQFNAPAVIRIAAGKKHAFKALTDNVALCCIHNLRGTGLESPEIEGVVHANPKR*