Scaffold SI39nov08_150mDRAFT_c1005029

Overview

Basic Information

• Taxon OID: 3300000195
• Scaffold ID: SI39nov08_150mDRAFT_c1005029
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 39, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.29
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N

Sequences

Protein ID	Family	RBS	Sequence
SI39nov08_150mDRAFT_10050293	F019751	AGG	VNSTLTRTRGPELSKDFKNYIFNQWMFFGKNAYQITEGINKDTKLMSQFGKTTPAGVHYHIKNIEKDLEDTISEDAMDTYIGEFIRARTGFENDVADVEDLMVHEKDKGLDDMDKELYLKLSRFRHEIKLDSFKMLQDSALPLQVKKLKMERNKL