Scaffold LPjun09P16500mDRAFT_c1002265

Overview

Basic Information

• Taxon OID: 3300000179
• Scaffold ID: LPjun09P16500mDRAFT_c1002265
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4255
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014154	Metagenome / Metatranscriptome	265	Y
F025142	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P16500mDRAFT_10022651	F014154	N/A	MTDDELFKIKPVGNTKLVMENKRKTVSPFNSAKHLKSANIPALCNQCVYRSIDDGGNGKCPKYEKDAVCAIRDDFVKFINELDTREPEDIK
LPjun09P16500mDRAFT_10022654	F025142	GAG	VETHLKKSKLIRQTRQVEVISMSSADMMGRTTEFRVKAGSRATLQLTVADSSGTAKDLSNATTYATGKWKVWKPGGTLVIDGSLVFTTRASGIVSYSLTAADTAVANAGIWAGEVELKDSNGNISEQTETFQFVLEESY*