Scaffold TB03JUN2009E_c000032

Overview

Basic Information

• Taxon OID: 3300000176
• Scaffold ID: TB03JUN2009E_c000032
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48962
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (67.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F011824	Metagenome	286	Y
F020647	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
TB03JUN2009E_00003228	F020647	AGGAG	MFETCVDQLVKVTLTNEPIKTEWFNGTLFVSTINEAQARSVFHRLSQTLGLGKVQISPIGDTGEYAYDFV*
TB03JUN2009E_00003236	F011824	N/A	MTLPIFKNGDALYTIIYRQEDARSRLLKWLNSSRSIQARVEDNKLYLYDYNSLSVFILNWSFGWDNLLIWDCYAKRHINI*
TB03JUN2009E_0000328	F001008	GGA	MSKSKHKPYQWIDGETADRITSLNLKDYRAYLKKDLKDWKKNPKTESNPNGYWLHPEDVASHIRTIDALDLIISHFIETSDEIK*