Scaffold TB03JUN2009H_c005937

Overview

Basic Information

• Taxon OID: 3300000162
• Scaffold ID: TB03JUN2009H_c005937
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054521	Metagenome	139	Y
F091218	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
TB03JUN2009H_0059373	F091218	N/A	MPETAKVVDSFRTVFPKIKVLYAEEGDYRIGKKPDTSKYVVPCIDERKLEKRKKK*
TB03JUN2009H_0059374	F054521	N/A	MSEKQTDAIKDFPMEAAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPAEPKPSPIVTQ*