Scaffold TB03JUN2009H_c000009

Overview

Basic Information

• Taxon OID: 3300000162
• Scaffold ID: TB03JUN2009H_c000009
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81225
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (59.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036693	Metagenome / Metatranscriptome	169	Y
F043282	Metagenome / Metatranscriptome	156	Y
F078629	Metagenome / Metatranscriptome	116	Y
F095137	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
TB03JUN2009H_000009137	F036693	GAGG	VYNKPMRPRNPVAKDLRTPKYRMRTVESKVKYIRNPKHRKADHGLGV*
TB03JUN2009H_0000094	F078629	N/A	MADIVAVVTPDQALSVAVSEGVLTLSQTNLAAPAVVESISNIADVDITTYGKVNGSILVYKTNTNKWTASTTLDAQNMEGGEF*
TB03JUN2009H_00000973	F043282	N/A	MMIEKGLKMIVNRGDVIRSYDFKPMVGREDCFVEGVVERECTDQGYTAYKITVTKDSWSDATDKGRVGKIVYVPKMVAFMDYPGRVINLSRI*
TB03JUN2009H_00000974	F095137	N/A	MPTKRIRKYPEKKCPTCSKLFTKQGKYCCRACGNSRVFTPTYKAKVSNALKQKMIDDPEFKQKQIAKIMPDIPIPPQVESPLGLDQFISDGDLWTEAE*