Scaffold SI48aug10_135mDRAFT_c1012295

Overview

Basic Information

• Taxon OID: 3300000160
• Scaffold ID: SI48aug10_135mDRAFT_c1012295
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1646
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038848	Metagenome	165	Y
F074779	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
SI48aug10_135mDRAFT_10122951	F074779	AGGA	MKTFNQYIFEAQAGFNTKDMIFTNAETPALILSPTALERAFGTLDTITAWHVTDLTGVKGLIKLQGKKSSISVLTEIEPSDQQPFEGIETGGGFVVELEGTELVSMDQDAWSERLEGGRRGISVTKELFPNMYRHLEFMVKKIYEKYSNKPYPNNARQGGFVLNELAKVLSQKEKGQFIKEYIDNCEEILKKNKRTRDELRKYGRAMNVSLNKKHFYNESIVNQISLKNVYVVSEKWEQFGRVDWGSDGEDELKMLKSVWKNIQI
SI48aug10_135mDRAFT_10122953	F038848	N/A	MDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQIVNNFKVKTAHFFKLKLKIAQTEKEASLYPEHQELMEFAKSKGWKVKIWDAAIELEAYTREVAKKELGK*