Scaffold LPaug08P2610mDRAFT_c1000398

Overview

Basic Information

• Taxon OID: 3300000159
• Scaffold ID: LPaug08P2610mDRAFT_c1000398
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9633
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011942	Metagenome / Metatranscriptome	285	Y
F041708	Metagenome / Metatranscriptome	159	N
F051859	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_10003984	F051859	N/A	MSRKVGDSIEFKFAGGREKGTIKEIKKKGNKILSYSIWDGSYNYTITKEMIL*
LPaug08P2610mDRAFT_10003985	F011942	AGG	MGPEEFHYIDKFQNQYFKNMREVRISSLYWVWDNLSSNSGSIRKSTIVSLIPYTSLSELLTDLESDERYEDCKVVWDIMKLYKENEQNGEYKKLF*
LPaug08P2610mDRAFT_10003986	F041708	N/A	MNKMENIKNYSNEPIGEWKIGDDEHFISFALKKKPKWFHRQMARFFFGLRWFDYVSKSPSKGIKVGSVSKGTPKRRFKS*