Scaffold SI54feb11_100mDRAFT_c1021286

Overview

Basic Information

• Taxon OID: 3300000158
• Scaffold ID: SI54feb11_100mDRAFT_c1021286
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 54, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075317	Metagenome	119	Y
F092729	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
SI54feb11_100mDRAFT_10212862	F092729	GGA	MTSRRYQIQQKLKPLYEIRTRCGTQFAKAKEANDTETIEIWERVWKAVANEIVALHDETYEINDKENGIVKS*
SI54feb11_100mDRAFT_10212863	F075317	N/A	IPCHFANTKINTVPTKGNNMRVSNLIFDAKMKNNAWLGHRVEMPNTDMQRHISSTDAVRKFIAEFGDVEIVYDEYYGHYAVPAFTEGREAYSKLKQADCDRYGSN*