NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold LPaug09P1610mDRAFT_c1000012

Scaffold LPaug09P1610mDRAFT_c1000012


Overview

Basic Information
Taxon OID3300000149 Open in IMG/M
Scaffold IDLPaug09P1610mDRAFT_c1000012 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)35272
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (91.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014835Metagenome / Metatranscriptome259Y
F025990Metagenome / Metatranscriptome199Y
F038680Metagenome165N
F043915Metagenome / Metatranscriptome155N
F069472Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
LPaug09P1610mDRAFT_10000122F043915GGAGMSNVIHLLPTQASADEVLEDCKGEFAHVLVIGWTPDDALTAKSTTSMDMKEIIYLLEVFKHAIITAGHEVE*
LPaug09P1610mDRAFT_100001227F014835GGAMNTNREYKTTLAQQEDLNWDGDPELDVEYECEEEKDLDEYVVKYFYD*
LPaug09P1610mDRAFT_100001230F038680AGGAMRDLPTENEIKESITDCNTWYRRFFRCWIDGSYLGFEHYQDNCDKVRRDYNSDKALRALAINSFCEFVAHEENCSPRTVQRHMVKTVSRDDLEALNVELIDDLRDLVRDDMEQTA*
LPaug09P1610mDRAFT_100001234F069472N/AMPNTGSTTAEGEGSMSDSYSYDIDVTDPNELDPIDLMIKDLVDYKLNACSVQELLAMAASWMTQDLENKSLSAVQAIHNDLFARQEELH*
LPaug09P1610mDRAFT_100001246F025990GAGMTEEHPVYRAQFYIQELKKYTTWTDYLAYYKEQDDKIMQFSNYCMQMWSSYMNDKIKQQQAPLSYKEYLKKYKERVTKST*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.