Scaffold LPjun08P41300mDRAFT_c1000380

Overview

Basic Information

• Taxon OID: 3300000141
• Scaffold ID: LPjun08P41300mDRAFT_c1000380
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8932
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P4, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Depth (m): 1300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031657	Metagenome / Metatranscriptome	182	Y
F039346	Metagenome / Metatranscriptome	164	Y
F044590	Metagenome	154	Y
F044731	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun08P41300mDRAFT_100038010	F031657	N/A	MSKNTKKKKKLHFLYHIEDVGFKMLTESEAEAYKSENGDVIWNVHKSIDIEPEWFLRHEFKE*
LPjun08P41300mDRAFT_100038011	F044590	N/A	MIIKVNDRVEVRPIGSGVLRDGIITNISISTNAELDPAGERGVNVEELDLSNEFPGSICYTDVTFNDEDDETGDLKWAYFSQIKQNE*
LPjun08P41300mDRAFT_100038022	F044731	AGG	MTFEDIYRKYEHLTVELIENEEIGPLEVAGAMMGQAMKLYKLTLSSEDFDALMTIITHASGLEGDRFTYDDYDSTNETKH*
LPjun08P41300mDRAFT_100038024	F039346	GAG	MLTSFVITLIECLEIAFITLLISQTKVNKSTITIYASLGLLGGLLSAYFLHDILENYEWLMYAILSSLFLYLFVKNKEVRQHIQQHVDDISQSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWLAAGLAAFVAVMIYMFARDSKVKVYIFKFGYWAYLVFAIWFGYEALEHLHIL*