Scaffold LPfeb09P26500mDRAFT_c1005329

Overview

Basic Information

• Taxon OID: 3300000140
• Scaffold ID: LPfeb09P26500mDRAFT_c1005329
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1956
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010879	Metagenome / Metatranscriptome	298	Y
F016206	Metagenome / Metatranscriptome	249	Y
F023717	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
LPfeb09P26500mDRAFT_10053295	F010879	AGGAG	MTKRKVLKEVLFDDVEEKIEYDFLTRDQFFAKVPETPPMSVSGVEMWERYLQNPKGFKF*
LPfeb09P26500mDRAFT_10053296	F016206	AGGA	MAHAHKGKKKVSKAMGAILKAPKKAEKVVKAAVKHVNHTHWDTKDAFAAAITASGINPNAINVNAEWDLYQSDTEGYRNHLKLEK*
LPfeb09P26500mDRAFT_10053297	F023717	N/A	KIGEVKWQNLESFKSKKELEKEGRTLGIELDRRHNREDLIEELEAFDIKVEPKELPRFATDAEAGFKEESSDVTWNSIEEFSEAVTSSGMLFNSDFIPVNIEALYEAFTSNPEEFKETPAYKFLTQ*