Scaffold LP_F_10_SI03_10DRAFT_c1014594

Overview

Basic Information

• Taxon OID: 3300000137
• Scaffold ID: LP_F_10_SI03_10DRAFT_c1014594
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1466
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047713	Metagenome	149	N
F079216	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_10DRAFT_10145943	F079216	GGA	MTVCDKCGHGMLLHGCVGNKGYCSEGNGNWCECTEKGKTYEEEISDLQHERIMS*
LP_F_10_SI03_10DRAFT_10145945	F047713	GAGG	MEIIGQGEVAALEIIKDMFGNSCEYLTQVKLSDMVTPEYLDTFSDRQLKETIDIVVDTGFQYLAIRVQDKHHASARMATIDNIQKLMLEWNGWKVIDIWHYECKELWKDKVNEKSRLELENAIKESSID*