Scaffold SA_S1_NOR02_45mDRAFT_c1017180

Overview

Basic Information

• Taxon OID: 3300000133
• Scaffold ID: SA_S1_NOR02_45mDRAFT_c1017180
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 02_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 851
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.237209
  • Long. (^o): 15.677776
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054045	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR02_45mDRAFT_10171801	F054045	GAG	VNKWKHLIFFDKEGKNYNMDYDSTTDMWSGDIFLPQVSIDLFEVGQLFILEKMINATTNNFEYGYPHESTGATGGCAWEVEWDTTQPNEIFLFQFNKDFNTGTQSALVQEPDGPPLVKYDNIRVPLTYDPNQTINPKGFIISDKIVSESLQLNIAFSSSDENTYKRKLLIVDTCTNTKV