Scaffold SA_S1_NOR08_45mDRAFT_c10050925

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SA_S1_NOR08_45mDRAFT_c10050925

Scaffold SA_S1_NOR08_45mDRAFT_c10050925

Overview

Basic Information
Taxon OID	3300000128 Open in IMG/M
Scaffold ID	SA_S1_NOR08_45mDRAFT_c10050925 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1527
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	Norway: Adventfjord, Svalbard Archipelago
Coordinates	Lat. (^o)	78.237209	Long. (^o)	15.677776	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080617	Metagenome / Metatranscriptome	115	N
F099229	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR08_45mDRAFT_100509253	F099229	N/A	MLDNIKNIEEIGKVLLNTPTLRTIYKDKFEIKTVDFEFVEKTSSSQFTSKYEHYIFRVTLYTDISINFDERIKSGEIDSYEYIEPELWDYGIDPFYLADIIIPDQILNIIVPRDGTKIAIELTILGDEGQIIWNDDMFGRPASSQFH*
SA_S1_NOR08_45mDRAFT_100509254	F080617	N/A	GFDSEYEVVSIIDEKTGEEVTDSDLGNTENYTATVKSKEPLPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKSGENTYRTLQSFEDKWGRSLDRDANDFQASPNSWIELSNGSVVDKITGDSFPLMSNGLIDKTEVWNIARVDDDEWWDSLSDEDKRNLTNNFS*

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