Scaffold SA_S1_NOR08_45mDRAFT_c10004257

Overview

Basic Information

• Taxon OID: 3300000128
• Scaffold ID: SA_S1_NOR08_45mDRAFT_c10004257
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6758
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.237209
  • Long. (^o): 15.677776
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006989	Metagenome / Metatranscriptome	360	Y
F018936	Metagenome / Metatranscriptome	232	Y
F021804	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR08_45mDRAFT_100042571	F021804	N/A	MMLPKTLNTAKLKVKYVLGNHTTQPSYPDAEDVIFELIRDYCSKVAKEIKFTDISMAKRWDLSKEQCDTILATLLKHKLVNISLQN
SA_S1_NOR08_45mDRAFT_100042577	F018936	N/A	MEMSKEETDRAFSTEGSIFQFDLLTTHVDKMKSLFNLERDEDTFTLAVTDKGVAVQGPSYDATLAHSYEGDNAVGEKVVIYKKYINLLDKENYKVVVCSNKVVFKSLDTNTHLTVAVAITDED*
SA_S1_NOR08_45mDRAFT_100042578	F006989	N/A	MEATIKKIDGYELSTFVKKLLPIDKFIFMKIGKEGTVSSVYFPERDAVKLVSTPTSDIFDTDIDNSVKVSFYNGTKVIDALSHFNGDIQGKIKYTEIDGELMAVILQLKMMILRLI*