Scaffold SA_S1_NOR05_45mDRAFT_c10072978

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SA_S1_NOR05_45mDRAFT_c10072978

Scaffold SA_S1_NOR05_45mDRAFT_c10072978

Overview

Basic Information
Taxon OID	3300000127 Open in IMG/M
Scaffold ID	SA_S1_NOR05_45mDRAFT_c10072978 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	818
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	Norway: Adventfjord, Svalbard Archipelago
Coordinates	Lat. (^o)	78.237209	Long. (^o)	15.677776	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045851	Metagenome / Metatranscriptome	152	Y
F046001	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR05_45mDRAFT_100729782	F046001	N/A	MTKILFNTVYKTINQITNSNKLNRPVHIIYGGLMADNSDIETITKILDRSELKYKLEPCKELIKL*
SA_S1_NOR05_45mDRAFT_100729783	F045851	N/A	MTLQDHNTINELIKFYMKQRSEANYKKGIQPIDGFKIHALLVSNAIAGQKKDLNIY*

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