Scaffold BS_KBB_SWE26_205mDRAFT_c1016105

Overview

Basic Information

• Taxon OID: 3300000126
• Scaffold ID: BS_KBB_SWE26_205mDRAFT_c1016105
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1241
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBB site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.350163
  • Long. (^o): 18.107847
  • Depth (m): 20.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F012964	Metagenome	275	Y
F075993	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBB_SWE26_205mDRAFT_10161052	F000973	GGAG	MPYGLRKGLEDIAYELKGIRNILGSMWHSRYSNAETDIANPEMFADEYISTEECGRRLGVSDQTIRNWIAIGRKNADKGWVEGIHYVNVSPDVHKKAVLRIPWNRLIQSFVKNENINLKNLRAQYHLYHATKEVLE*
BS_KBB_SWE26_205mDRAFT_10161053	F012964	N/A	MEEQIPPSQPPMQQTLEGQITPEALAEMKARAMELAIQQTVPQRLPVEMPPQVVYVRRNLTVAELLLVLLLSCGIVTGIQGLWYLGTNLLPRLEIRVR*
BS_KBB_SWE26_205mDRAFT_10161054	F075993	AGTAG	VANRRITEFPAIAANEIVDQDVMTLVHVFEVDPSLRNKXITFSQFXDYLDLYYAPGSGALISGNVTITGNLTVGGSSSFNTVTAS