Scaffold BS_KBB_SWE26_205mDRAFT_c1005657

Overview

Basic Information

• Taxon OID: 3300000126
• Scaffold ID: BS_KBB_SWE26_205mDRAFT_c1005657
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2233
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBB site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.350163
  • Long. (^o): 18.107847
  • Depth (m): 20.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004451	Metagenome / Metatranscriptome	437	N
F012974	Metagenome / Metatranscriptome	275	N

Sequences

Protein ID	Family	RBS	Sequence
BS_KBB_SWE26_205mDRAFT_10056575	F004451	AGCAG	MRPILDNYIAAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDVGKVKAYLLNTIKMQILWSTSLTNRQERVTATDISMPIAIDDDTDLYDKIREDMQYQHNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARGMAEYFKIPVTSAHYWIQEIKNDLKNLRDEN*
BS_KBB_SWE26_205mDRAFT_10056576	F012974	N/A	MFTEAEQVIIQQVFSLPEKEQSYKIHLLKLKAIKDRLVSYEKECFCGGVRRKIWLKDFKQWYETYT*