Scaffold BS_KBA_SWE12_21mDRAFT_c10000061

Overview

Basic Information

• Taxon OID: 3300000124
• Scaffold ID: BS_KBA_SWE12_21mDRAFT_c10000061
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 32805
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (21.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBA site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.363333
  • Long. (^o): 18.119167
  • Depth (m): 21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020094	Metagenome / Metatranscriptome	226	Y
F028939	Metagenome / Metatranscriptome	190	Y
F046638	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE12_21mDRAFT_1000006127	F020094	N/A	MKTNYLISYIYISFFNNHKLISYVININLSSTNTLININNIKGNPKFFYSAGMFNLQKKQKIRQPKAIIIILRALLLKSKIFKTKPVAVHFNNLFFNYQSYIFKKLKQKIFTKLVISYNFRSHNGCRLKKKKRIKIRTRTRKLLKE*
BS_KBA_SWE12_21mDRAFT_1000006130	F046638	N/A	MINTLKNSIFKNVITLIHGPIIILNSNNTKLTFKELENISPLIGLLGFRLNNKVYSKEQIKSLKKMSYLENFHGFHNSMKTFTKMPYYKFKSKKTLLISK*
BS_KBA_SWE12_21mDRAFT_1000006150	F028939	N/A	MKAGKVRNRNYKLFKYNLLKLQIYSNKPFFDTTNFSNNILEQIEAYLKQVLKIIFEYHVCQFKILFIGFPVVSKMKQMKLIHFTNHDFISEKS*