Scaffold SA_S2_NOR13_50mDRAFT_c1000224

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SA_S2_NOR13_50mDRAFT_c1000224

Scaffold SA_S2_NOR13_50mDRAFT_c1000224

Overview

Basic Information
Taxon OID	3300000120 Open in IMG/M
Scaffold ID	SA_S2_NOR13_50mDRAFT_c1000224 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 2 sample NOR 13_50m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	10937
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (15.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	Norway: Adventfjord, Svalbard Archipelago
Coordinates	Lat. (^o)	78.243786	Long. (^o)	15.656147	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F087067	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S2_NOR13_50mDRAFT_100022415	F087067	N/A	MCKIAVILYTLLCSIAYGQECNPYYTPKNYILDKNKSAAIGYVACLHARGIVAEVGYDNVFLGVLAMGQRHYGAAYTFLQYEVPFGRSRVYAGPAYRLNNNPSIIIGRVGIDFKIYKRFWVTGSILQIDRNLNYLHVGFKILI*
SA_S2_NOR13_50mDRAFT_100022416	F005243	N/A	MATSAKQNQVEDKEPILSKEELSARREEITAFYKDNIPHLEVQAEYEILLATIEKSRAERMQASMFMAQQYADQKDGVDVNSEEAKAFKQAMDEAAAKID*
SA_S2_NOR13_50mDRAFT_100022418	F004866	GAG	MAIVTNVDLKLKVDINDSIKYQILTYCFFNKTLISNTDLDFLTELSKNPKVEISKFCNILTEKSIFKSPQSARNAISKAEKKNLLIKNGTNKKTISIKKEINVQVKGLVLLNYKILGNESQEA*
SA_S2_NOR13_50mDRAFT_100022419	F006666	N/A	MNPKKHSEFKNGIAKEVGVHSQLVDDFITFYYSRVRKKLSKLEFPRIYIEGLGTFYLRKNKLENAIKRQKSMLGNIAKRTYNGYAKSENILSNIEEMEKALKQMEQDILTKKEFKAKI*

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