Scaffold KGI_S1_ANT01_95mDRAFT_c10014251

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KGI_S1_ANT01_95mDRAFT_c10014251

Scaffold KGI_S1_ANT01_95mDRAFT_c10014251

Overview

Basic Information
Taxon OID	3300000119 Open in IMG/M
Scaffold ID	KGI_S1_ANT01_95mDRAFT_c10014251 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3517
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	S1 site, Potter Cove, King George Island, Antarctic Peninsula
Coordinates	Lat. (^o)	-62.230512	Long. (^o)	-58.656117	Alt. (m)		Depth (m)	9.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073087	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
KGI_S1_ANT01_95mDRAFT_100142514	F073087	AGGA	MNTQRQTSFTKTIIGSTQRLFRSNKNHSLLASNHIDARTMKDIGIEQFGLN*

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