Scaffold KGI_S1_ANT01_95mDRAFT_c10001048

Overview

Basic Information

• Taxon OID: 3300000119
• Scaffold ID: KGI_S1_ANT01_95mDRAFT_c10001048
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13356
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: S1 site, Potter Cove, King George Island, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -62.230512
  • Long. (^o): -58.656117
  • Depth (m): 9.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038239	Metagenome / Metatranscriptome	166	Y
F039638	Metagenome / Metatranscriptome	163	Y
F049629	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
KGI_S1_ANT01_95mDRAFT_100010482	F049629	N/A	MMDLVDFKNAQIKALQESNAKQEVKITTLETWIFELTDKKCPKDYKQVIRTELLKTN*
KGI_S1_ANT01_95mDRAFT_1000104821	F039638	N/A	MIIKHTLELLASEDWLVSDKDIQIAKGLYELPTTFAELKMNNKRKKLLK*
KGI_S1_ANT01_95mDRAFT_100010485	F038239	N/A	MGWKYKHKNSFSDFIPTYTDTYTKDMDEEGLKVLKWSMLDSPDSLGSGKRFMESDPVFILDTVFRKERLKGYIHLGYTSKAYADRLGLGLESEHRIGKAIKFKCINPSHRFRIVKGLIQYGIERVRLYDDSIYFDTEHKLKGADLSFRHF*