Scaffold TDF_OR_ARG05_123mDRAFT_c1008461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TDF_OR_ARG05_123mDRAFT_c1008461

Scaffold TDF_OR_ARG05_123mDRAFT_c1008461

Overview

Basic Information
Taxon OID	3300000118 Open in IMG/M
Scaffold ID	TDF_OR_ARG05_123mDRAFT_c1008461 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	884
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	OR site, Ushuaia Bay, Tierra del Fuego, Argentina
Coordinates	Lat. (^o)	-54.80407	Long. (^o)	-68.288208	Alt. (m)		Depth (m)	12.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029758	Metagenome / Metatranscriptome	187	Y
F058909	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG05_123mDRAFT_10084612	F058909	N/A	MIDLSNTEINVLMVALDHMEEEISDLMSERTLRGNMWKERLDACESIRTKLQKLC*
TDF_OR_ARG05_123mDRAFT_10084614	F029758	AGGAG	MRKDDRLNAVEHIWHAESDRWIYIQRYASGYLGLNFMQGDEYDYFKKNFCEMDRGASEFYETMKTDLIKLRVEMSELEFIDKVMWIYFEAKTRQ*

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