Scaffold DelMOWin2010_c10033345

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10033345
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2473
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F074747	Metagenome	119	N
F091859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100333452	F074747	GGAGG	MNIKYIVPVGSKITRKFYCPVLKKQVALTTDFTEDEIVFNANELKTVDSGHNFSYFRFTVGATNYEGQPIIKKFDVDYSVSAEYIEINKQMEVA*
DelMOWin2010_100333456	F002485	AGGAG	MKTQIDSKSLYFENIGDKTIYYSYNTTVAVKTPIDTYVCENVWSVTTAKHLNRIEELTGSNREYRMRYKDFRNFCINNNVNKHYN*
DelMOWin2010_100333459	F091859	N/A	MRTKQKLDKRTRARLRELSRTESVYNLQGSNSTYRGFSTHGGKSKRCYYQAISNANQNQLANFVDSGRSQKIYS*