Scaffold DelMOWin2010_c10019024

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10019024
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3624
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F050749	Metagenome	145	N
F059448	Metagenome	134	N
F066148	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100190243	F059448	AGGAG	MTDTGFKTIIKVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWGVLNCT*
DelMOWin2010_100190245	F066148	GGAGG	MSNHLSEVAEGIIQACPTQLNPDEMSTLIAYMIWSYSMQGDWDDMLPKIVRCINLDDGHARIVRVANRDANKFLDKVLGDISNAKRN*
DelMOWin2010_100190247	F038862	GGAG	MSDKAWHISYLSAIVGPCAATTDDGCMAWEDEEKSDFVMRLLDRDNDAKNLLVVIQPEMNELQLYTVSGYCVANDLPYMIKDWDALSAEGQKEAQKTRH*
DelMOWin2010_100190249	F050749	AGGAG	MIESRFLDKAAATELLNNNWNSNRKIHRGLKDQHVKELAFKIKQGRWVVDAMETPMLVDTDGVLYNGQNRCMAVILADQGVVVQCRIESPEKCQRLYASLDLGKARTVADITGLNQSNIVLPILYLMRCAGLEGRLKDEATVSRIADTYMGDILHHFNQNTRWVKNNRCFNSVQFKAAMAYCVYTRVLPDYEAISVLDMLQNDKDFLWPSMYRNYREQIMFPNGKLNTGGKTVSNDKFCRGVYLLERRKKDQSKIQISSGFLADLNSNVRRVIRMAAEE*