Scaffold DelMOWin2010_c10016797

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10016797
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3931
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100167973	F018478	GAG	MVKEYEEMDWSKEYTYKDKKIYISHETKKYIICSFNENGVGKFKIEKTAFYG*
DelMOWin2010_100167974	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEINETMLNRNRIEQNGKRI*
DelMOWin2010_100167976	F099320	GAGG	MEENVYSYCXEVHEDGQLYMVTEYMNGYITIWPANATIETEGEVYFINLYED*
DelMOWin2010_100167977	F025412	N/A	MDYRELKWGALKSYATKLGINTKGMTKVALLDCLAAMPEEAHEVEELTPFTGIKQSHPLFEELEPYLPYLKAYKKLNAISRDPKVNKAIATLFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNRLAEEYGGKRI*
DelMOWin2010_100167978	F103288	N/A	MSIIVISILTILGWTSLFKQTFSTKEGFRYVYQPISKILYTLDFKPLNCAYCLSFWFGLVLTIAFMDITYMVIFLYFAKQD*
DelMOWin2010_100167979	F027524	N/A	VNEAFIKEKRQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPNNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK*