Scaffold DelMOWin2010_c10014024

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10014024
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4413
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F012117	Metagenome / Metatranscriptome	283	N
F013088	Metagenome / Metatranscriptome	274	Y
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100140243	F012117	GGAG	MDILGGMSSSNEGQQVYLAFKTMQQQFFANGETPVEFQYLQLDPATFKSGWGRYTKAEGFEYHWDDKFGVVSPKPEDDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNNILGSFWNQMDSSSANLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRSAEFVIPSWYTDEEKPVEDTFKSPNDGLADKVQEMVEKNELSDDDIPF*
DelMOWin2010_100140244	F006845	AGG	MKSYKKQMDLNSYLLQEGFEEFCRESYERISLACEMLHIVNDEDYESFKERCYSQLETDYLNSIELTIH*
DelMOWin2010_100140246	F067646	AGGA	MLDWILYLIGAVFGLVAVGAVISVIAFIWMIKELD*
DelMOWin2010_100140248	F013088	GGAG	MNDKTKKALWISEDLHKEIKIFAIKNNMNIESATQMILKLGMVSYKENKNGSK*