Scaffold DelMOWin2010_c10010821

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10010821
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5160
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F103559	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001082111	F019648	N/A	VTEKELNLLDRFASKYKIDCVPSGGKYDFWDFTYEWDARKFYCEMKKRNFTLDTAKSKYPEGLILELHKYERILRKTKNEKSAQGLYINFFDCDSVLVFNLNKTRINNWVWRTMPESTDFGRKSYVYKYITLLEYDKGKVLYI*
DelMOWin2010_1001082112	F032280	N/A	MPDQITLKAINLLREADPNLDEMNSLDKFIAHQSEVIKMYKQFEGHPQAEKLKPRLKVFEESALAFTWVHTQMMAYKREKLLANANEMEMANAVIELKSELDILTKLNKSD*
DelMOWin2010_1001082114	F103559	N/A	NEDGTRPAPNMSDVEFGAMFGNRADNFLVFHRNPQSEKWNVTEIHAQKIKFQKLVGVPTPELTPVCLFYSYSLRRFRYLNENGTLIDPIQETIIKRPTNDIF*