Scaffold DelMOWin2010_c10009318

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10009318
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5660
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F032992	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000931810	F010910	GGAG	MLTIYTIFGIMVGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIYEKK*
DelMOWin2010_1000931813	F018906	AGGAG	MKTKCNPLKLNETRFLKRARKQDGRYVKRYFFSNGLGASVVCHDHSYGGHSGYFELALLKYSHGTDPEMTFEIIQNEHPIKEHHGVSNVWGWQDFHQVAAILQEIRNYNTGDYNYNAK*
DelMOWin2010_1000931815	F012114	AGGAG	MSHNNCIMPEVRPNVWVVIDAQTGDKLGEVGAITESEARQLVSHHVLIPFRLSHIEE*
DelMOWin2010_1000931817	F019646	AGG	MSNVNKNFEIVYSSDCCGASVHSDADICPRCYEHCEVIEDRTDYDCSEAVHFQAGLDFYGAA*
DelMOWin2010_100093185	F032992	GGAG	MNNAMDPNFRYYDCSKIVNEITGEQENNLSIMVAVPKIDLSTAENRQENLAAISGIVEQQYGCGVETFTYEEYTG*