Scaffold DelMOWin2010_c10002508

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10002508
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11610
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009787	Metagenome	313	Y
F016797	Metagenome	244	N
F018540	Metagenome	234	Y
F052601	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000250814	F018540	N/A	MEQLRIDWWDKFNEELYCNYLIAKDEKMNTYKILYRYYKGANTDAECCQAVKYVKAEDKQEAIKLFGLWEKLIISIEKV*
DelMOWin2010_1000250815	F052601	N/A	MSYEIEIEYYDQDGAIFYIGETPYQVELFIETRMIEELDSYNSFNDKLSYAQVEETYYRVQKDTLRCDGVNYYNELDLCEELEEILNKWNN*
DelMOWin2010_1000250819	F009787	N/A	MKAIYLICVLTMFSCSAKYHYNKALKKGLQVTQTSDTIRIATIDSIPVIKHDTIVYERIISSKDTIVYYKNIIVPQTRLETRIEYKLKRDTLKMITRVEVQKAKAQAKENKKTNWWGIVIFICIFGGVVYTVNKLFNKYL*
DelMOWin2010_100025086	F016797	N/A	MDALEILKAKINLQTTIIKFTSSIEELQAKHPERKDLIDSMVDSLEDISHFQSVFMQFEDQYLLECKSNLRLQMVISEQKHELDKLNILVENLKDGI*