Scaffold DelMOSpr2010_c10062538

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10062538
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1556
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F038195	Metagenome	166	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100625381	F003976	GGAGG	MSRLYNDYYFEKEDVLDTLEKLDMSVRLLNVWVNEPMGLENAKYVLEKNANQEFKWFSRNMVKELVEEET
DelMOSpr2010_100625382	F059441	AGGAGG	MKTWSSTITYSVFDMGRECETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE*
DelMOSpr2010_100625384	F010571	AGGAGG	MSMNTRQAIYIETLYEGFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG*
DelMOSpr2010_100625385	F038195	AGGAG	MKLHKDFYEYKTIPFTYFKKVANRHDFKKQWVTVRCQEDIMKQQPHNVEIRRLKKNV*