Scaffold DelMOSpr2010_c10060271

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10060271
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1599
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002907	Metagenome / Metatranscriptome	521	Y
F028740	Metagenome / Metatranscriptome	190	Y
F038645	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100602711	F028740	N/A	MTSNPLSSDFSYKKYSLEQLDNWVHDALNCEDLTPQDIYDTIVKCVDESVEYHKKHLTKSVELLSLLKGHRPVDFETTQSDWNDFWEETYYPEEH
DelMOSpr2010_100602714	F002907	GGAGG	VKQDPYWFFKKWGIDDPTPLEILSEKVQQLEDRVRVLEECNVEQTNSLYECWNSLDARIDILAEHKTDV*
DelMOSpr2010_100602717	F038645	AGG	MLLILILRRMPELTQQQWKYIFTAVSAYKANHPKSIPCYKGLNEDLSYILDIIHPYANLNNETTDT*