Scaffold DelMOSpr2010_c10020400

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10020400
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3240
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005038	Metagenome / Metatranscriptome	414	Y
F005431	Metagenome / Metatranscriptome	401	Y
F015660	Metagenome	253	N
F099988	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1002040010	F005431	AGGA	MMDFDDNEKGYSAVIYIMESSNSVVVHFGGFNDLRECRYFSHHIMEDFGIEQLLNVPQGVTVH*
DelMOSpr2010_100204004	F005038	GAGG	MKNKDINIYNIFSATYKRKMFSFIGFGELSIMPKVDKPIRQVSNVYQFPIKQYYNQRKRAK*
DelMOSpr2010_100204007	F099988	AGAAG	MVMNILSTELIKGGLMKTEFILYGLKLNEPDYLESIIHTSFNRNEIDKVKTLAIKKGYVRFRIATFNGEAPDFTDPKLINV*
DelMOSpr2010_100204009	F015660	N/A	MQHLTNNLELLQTMANKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRAKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDNLKVSGDKDSPLIVKWNG*