Scaffold DelMOSpr2010_c10017911

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10017911
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3501
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000499	Metagenome / Metatranscriptome	1074	Y
F004269	Metagenome / Metatranscriptome	446	Y
F015398	Metagenome / Metatranscriptome	255	Y
F022980	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100179111	F004269	N/A	INHLASFIMANRKNVKFRMQDRKTIFYSDLDKSLELIERFWDFWVGSETVDPKFVDLGKDTVGCTRLPHGKYQYQVYLKKDAQAFINETQKKNLWEFLERNVDDCLVSNYNIIDFLENRSPYCFGGYFYVKEEKYLTPIYMLAQQAIEKVIQFRKVKNGSNKKTTR*
DelMOSpr2010_100179114	F022980	N/A	MFLTEVRRHNDEELHAWAISLLTDLKNAGCKFTAHYIGYGQWTFGDENLIKSKIKKLKTIISKTGKTIIFCFDFTLTENKKEIIQIMEENKDAELLWIGAEKDPLDHPRINCVFWPADMLLQNKQYKKFNNVEKQPSQQRHWISANLGIRPHRIYMASLLRGLGLGNTGDLRIKTVSDNGYAPDNETLPLYVEEKFKLRQEINDISDESTKGYNELIQRKWWGSSLFLYSSYDALGKNQNNNAANFDKNLRPLYKDKTLEVVNETRHGHDPIFVTEKFINAVVGLNFIVMNGAVGTVRLLEDLGWNSCRHVINHDYDDIVNPIMRCEKAIRLNYRLFDDPDYCNDAWRDNIEILKSNSKWARDRLCNKILNACEDQVKKLA*
DelMOSpr2010_100179116	F000499	GGA	MCILVDESRRMMPTFNPTAESHKIQNDMCKAGTWLSQVPLNTIIQTVPQDSVKKLEEQSLPEYRRLAATLIEHFIEEFKTQGGDDAKIREHFERMYKWTQ*
DelMOSpr2010_100179118	F015398	GGA	MGTEKLKFKLELYATMWDKSPHAEIMIDDHSHFKGDITGTEEKPDVVEFEQNFDEGKQYKLIIHRSGKGKNQTVVNEKG