Scaffold DelMOSpr2010_c10012100

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10012100
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4433
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → unclassified Porphyromonadaceae → Porphyromonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F017125	Metagenome	242	N
F021100	Metagenome	220	Y
F028791	Metagenome	190	N
F038218	Metagenome	166	N
F105093	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100121001	F017125	AGG	MKRQYAIGPGLRPNVFGIWRDEPGHSMYEDDEPEPATHWTTERSDRDRQMSEFVRWRIARGERIAAESEQRRQRIQAARSAAAVMGADVFRAFIKGFNNG*
DelMOSpr2010_100121002	F105093	GGA	MILQRLSAAGPMPLNSAAASIMPLVPFSYVARQGKGSALAAAKIKLRSLQAGGWVQIAAGVVTVQRTERQTSGLRQCVDELNTTGRCDTSAIWSNKRSAQNMIARMKRLGXVSPDDVWPVVSFVGRQPASIDEFNQHKQAARLSK*
DelMOSpr2010_100121006	F028791	GGAG	MRWWNIAAALAVLAGGAEVQGQGYDNILWSPKIDDIPETPFLPVIQDDKGELLAHSSENIWGMVWTSLPEDGLNNHHKREFSVGDYYYLVENRIPSPVEDDWSLGGTLHHQNGALDFHSARRYYAYASVEQKWAAQQAGWIHIPISADHEGHWVMINGQIVWEIPVGERFTGEITAYIPEMTNTLKLEWGGKNDAADIRIEPARFYPETYSVPEPSLGDLIDLIGSGVGGLIGW*
DelMOSpr2010_100121007	F002942	AGG	MTDEQFTAFCVVLAAVSVPSVSLLFAGAWELWNYAKRAGQ*
DelMOSpr2010_100121008	F021100	AGG	MTDEQRIARAAMTIAGCIFEDCHQSTLVDKLRHCSTWRNQGTGDDLTHSDREGLRLLLDAARGFRCNLCNSETGAVIRAATVEEVCESAVAGPEGHIMVDGARCYVEL*
DelMOSpr2010_100121009	F038218	AGG	MNTELLNAIQNMLSNFANENAISLADEFGTREKFAQFVFSFTIKSLVDICGLDAKTAYDFVMGDGAFAKLADECWQQLNSVAA*