Scaffold DelMOSpr2010_c10009032

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10009032
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5263
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021885	Metagenome / Metatranscriptome	217	Y
F049303	Metagenome / Metatranscriptome	147	Y
F090093	Metagenome	108	N
F091957	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000903210	F021885	AGGAG	MNIFEKLKLLAEWSPLLTFAQRLAGEDDMHAKAVIVTEAMEWVADRTAVEWDDELASHISDILVSEEGEAFVRWILERMQVSDADTAE*
DelMOSpr2010_1000903211	F049303	AGG	MQTLLNDPVRVLAVIAAAAVLVVPYLPAIAKRLRAAWASLPTVPQPSKDGIGVSDLTMVLDLANRLRLDGNEKATELAKQLLDAMLEVPQK*
DelMOSpr2010_1000903212	F090093	GAGG	MSIRTIVVIACLYVSFFGLPNIELPNVQPPAPETPDVREPTADVQKAVADVADICERMDTFDRLVWMATWEDCSTIVAGEDDDVSVTFDNTLGLRLFTDSTFDVAWSRLANASGKYRGLGEAVEKAFTEVIGNDVRPWSDDLADDVIELYDALAWAGARSE*
DelMOSpr2010_100090329	F091957	GAGG	MRGDTTAINVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHQLPKRHNRSLRRKPEREPEPGRAERLASEETLDLAPRIAKRAAAVRATWSESLRQNRHYSNPQIFTVPLVPLEIEPEEEPEW*