Scaffold DelMOSpr2010_c10006699

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10006699
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6260
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054353	Metagenome	140	N
F068140	Metagenome	125	N
F076512	Metagenome	118	Y
F096056	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000669921	F076512	GAGG	MTDNKIVILPKAERVAQWNKWVEQAPKPIKDYFLMVERDAQRWEIAENQEILSASQLNEVNEIFEEDL*
DelMOSpr2010_100066994	F054353	GGAG	MKAKLDKSVNVWTPMIINITLETENEYLALKNIYAVQEVTSLDAEHRVRDRNVLTGLVSVIVEAISK*
DelMOSpr2010_100066995	F096056	AGGAG	MKFYTVYECEGYTFKWWGGSIIDVFKPVKDARKKPEPAYAVIEHYEEADNNVIKVVCLEWLVEEGVITGTEMYL*
DelMOSpr2010_100066998	F068140	AGGAG	MNITVSNTNGSFDNQSYVRVYVDSVKVAEVSPSRRNPLGYMRQYKNSKYWGEVRVQLECCALAGMFTLKEVDNIMNEVKGVSSGS*