Scaffold DelMOSpr2010_c10005981

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10005981
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6657
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F015201	Metagenome / Metatranscriptome	256	Y
F042290	Metagenome / Metatranscriptome	158	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000598110	F015201	GGAGG	MNKALIVYLVNQKKKQARKNVESKHAVTELKKQSAATF*
DelMOSpr2010_100059813	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFLRGVGHLELNIIERMYEISKQYLVLYQGEPAVRLPIQQDELEEVE*
DelMOSpr2010_100059817	F002985	N/A	MSYVIACWQDGTPHAVTANNKSNAFELIPLNSDVALNKIFSHPYRAGAQQVLTWINSNDSDLASKQLSIQDEARFRK*
DelMOSpr2010_100059819	F042290	N/A	MTLTYRGCKYNQEDQAKKDQAWWNLAHRPWLCLKYRNICYFPYVTGGQIK*