Scaffold DelMOSpr2010_c10002267

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10002267
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11279
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015087	Metagenome / Metatranscriptome	257	N
F015991	Metagenome / Metatranscriptome	250	N
F025987	Metagenome / Metatranscriptome	199	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000226712	F025987	GGA	MCSICGEDISFVCKVNVRCGHHVHHECRLNLVPFTKCSICNRIIINKIDVHLSDQDEFCHKRCETNARRYYPPCPVEGCGMALHKHHVITNKQCQQLIVELEGKTYEERMAIYLSYGFREDELGGGELDEETWKKIQTIISASLQEKETEGQVTVTRETKPKPVITPPKTYEPRALAPGERYKPPNKSRRFQERGVSLKALIPRHLKDRVHVSPQEDFALFSQGPI*
DelMOSpr2010_100022677	F015087	N/A	MYGYSVWLVPLNRRLLTKVYKFRHIPHITISTNHVTVPDPDNLGKLYNIVNFIPYGKIGKQYEVDPLHSLGWECEVEDLDIKHTPHMSHLYSFFPYAKVYSVYPTPMRLIAEVCVADTRSPNWEEWKIIKEKIPR*
DelMOSpr2010_100022678	F015991	N/A	MAFLPFLRHGDLYDLLDTTSKVLNELPNMEKQFNTKMADRYLYKRTHTTDEGFEIEMHLPGVGKDNIHIMLSSDDHEVTIGYGENRSASFDLPSYVDVSDEGYKASYVDGVLRLFFKMRTSDKKRREIRLD*