Scaffold DelMOSpr2010_c10001919

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001919
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12416
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045114	Metagenome / Metatranscriptome	153	N
F050411	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000191911	F050411	AGGA	MACGNIYDAFKVASEHLGEEIYRRASFSSIWGNLIPKGEFPKHVGLTKTVFEMGNAYPTADERTWDSYTLANGSNTGACGYNFQDYTVGFEELSYSPTHFQMRGPLLCKDDLNFDHLAPQFLNGYVEELTKLVQTEYDNKLMKEYYTKVPKAVMTSAFPISAAGASLTLAQATSDLTQEALDKAYIHLIHKRATNPDSNGFVSLANGGPLFTLYLGMEASQAIILNNADFRDDLRQGSMNSELFRRLGADTAIKGFRHVINPLPPRFSYAAGAYTRVNTFSNVSGTKGVYQDINPNYLDPSTAPYEAAFVMSPDVMSWDWVRPDNQVGSTRWEPQSYMGDWKFITGPEACASDGSGYDPFHKNGRHIAEMAGAAKPGANRSAGLMILYKRCQLNTLTTVTCS*
DelMOSpr2010_100019193	F045114	N/A	MKPLSVAVLIVLVTGCKQLDSLGNAIYDPIVTTNIVATPSGNYPVVSTNGWVLNPSIRGGIQVAGDVAPFPWAGLAANALIAALGVGAHIRGRQWKKAAVSGVSAAQTFKRELKQLDAAKAQAAKETVVREQRTNGSQEMIQKILGKFV*