Scaffold DelMOSpr2010_c10001102

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001102
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16661
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (47.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078662	Metagenome / Metatranscriptome	116	N
F097257	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000110211	F097257	AGG	MSKILKGTAFSYGSRTGGGVIQVRVSDDSGVKFSGEMYASEIRLSYEGDQATANNSDGEVVSVVSFNHRKVLNLTGIVLATSQTPNAGGVDSVTNANLAFSAPFKVGCDLWISYGSNNEWPEVNKSGSAGWGSTSNPGGVHGAPSYGDFHITGAEKTRSAGNFAEWSITAVEHIPIDYDGAGNADDSNT*
DelMOSpr2010_1000110221	F078662	N/A	MGDLRSFLRLQTDAWLLTLKERVADAVLSGAVTTSFSNASQSGTRELVLPTEELASQLTDVLHEKGLATGTKPARMTFARFSR*