Scaffold DelMOSpr2010_c10000515

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000515
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 24728
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031876	Metagenome / Metatranscriptome	181	N
F046078	Metagenome	152	N
F070680	Metagenome	123	N
F079993	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000051520	F031876	N/A	MSDEQRYCTVPVAEYDNINLEQVAATYGREVILDPPIVASGTERLIGFCGNKPTTLYGYTAYTPEQWQAEVSNPESAYYIDPDIL*
DelMOSpr2010_1000051521	F070680	N/A	MEIDANVVFAGVGALAVIGGAIMAYGELKTKVVGLTQRAESANQSREKIHDRVGKLEEETKVQRVQIDDIRQNNNKLFELVEGQSRTLGEIKQELAVIISKLKSHG*
DelMOSpr2010_1000051523	F079993	N/A	MKKKLLCLTLFAFTGCSTLNNAINTLPGYEFEQFDYSRTGNITSTSLSASNAKIENNMLIVEKAHVTHSNPLFGVNISVQGLKRPAAASTTGGVAPHGND*
DelMOSpr2010_1000051531	F046078	N/A	MNDMTTWLRTIHIFWCGIEFGVRKSDMDALANGTMWDTAYLEVRAVCEHRPKLHYWTKMVVGCEKHYLNLGILAVCWGSDLVEV*