Scaffold DelMOSpr2010_c10000328

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000328
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 30856
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (24.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007304	Metagenome / Metatranscriptome	353	Y
F070006	Metagenome / Metatranscriptome	123	N
F084184	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000032846	F070006	N/A	MQSKITQIEPKGTYTNASGTFNKYQVYLANGQNFQFLAKGEFKKQVGETIDFEITNEQYNTAKLIYNKPIQAAPPANREQIIVRQSMVKAAADFHASRPNADIQTVIADAQLLINFVNNG
DelMOSpr2010_1000032848	F084184	N/A	MQFNLNTEQQDAILYAVSHTLANKSDMSNQTLNDLYDILDMLKIEENKRYGLYSGTHEGI
DelMOSpr2010_1000032850	F007304	N/A	YIYYNKAKKMKFDLKIDYLGKKEDKGDTEKHIYNLLFKTYNAQIEGKFEKSELRQIIQILDNAIV*